OBO to OWL: a protege OWL tab to read/save OBO ontologies
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چکیده
منابع مشابه
OBO to OWL: a protégé OWL tab to read/save OBO ontologies
UNLABELLED The Open Biomedical Ontologies (OBO) format from the GO consortium is a very successful format for biomedical ontologies, including the Gene Ontology. But it lacks formal computational definitions for its constructs and tools, like DL reasoners, to facilitate ontology development/maintenance. We describe the OBO Converter, a Java tool to convert files from OBO format to Web Ontology ...
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A large library of biomedical ontologies has been developed in the OBO format, including important ontologies such as the Gene Ontology (GO). These resources have the potential to contribute to the Semantic Web in the life sciences domain. In particular, they allow the annotation of distributed experimental data in using a controlled and shared vocabulary. As the Web Ontology Language OWL is th...
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MOTIVATION To clarify the semantics, and take advantage of tools and algorithms developed for the Semantic Web, a mapping from the Open Biomedical Ontologies (OBO) format to the Web Ontology Language (OWL) has been established. We present an ontology editor that allows end users to work directly with this OWL representation of OBO format ontologies. AVAILABILITY http://www.aiai.ed.ac.uk/proje...
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Directed acyclic graphs are commonly used to represent ontologies in the biomedical domain. They provide an intuitive means to formalize relations that hold between ontological categories. However, their semantics is usually not explicit. We provide a semantics for a part of the OBO Flatfile Format by extending OWL with a method to express relational patterns. These patterns are OWL axioms with...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2007
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btm258